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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/VariantTools_1.34.0.tar.gz && rm -rf VariantTools.buildbin-libdir && mkdir VariantTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=VariantTools.buildbin-libdir VariantTools_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL VariantTools_1.34.0.zip && rm VariantTools_1.34.0.tar.gz VariantTools_1.34.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 51 5977k   51 3055k    0     0  3310k      0  0:00:01 --:--:--  0:00:01 3310k
100 5977k  100 5977k    0     0  3937k      0  0:00:01  0:00:01 --:--:-- 3940k

install for i386

* installing *source* package 'VariantTools' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'VariantTools'
    finding HTML links ... done
    FilterConstructors                      html  
    annnotateWithControlDepth               html  
    callGenotypes                           html  
    callSampleSpecificVariants              html  
    callVariants                            html  
    callWildtype                            html  
    concordance                             html  
    extractCoverageForPositions             html  
    matchVariants                           html  
    pileupVariants                          html  
    postFilterVariants                      html  
    qaVariants                              html  
    tallyVariants                           html  
    finding level-2 HTML links ... done

    variantGR2Vcf                           html  
    vignette                                html  
** building package indices
** installing vignettes
   'VariantTools.Rnw' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'VariantTools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'VariantTools' as VariantTools_1.34.0.zip
* DONE (VariantTools)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'VariantTools' successfully unpacked and MD5 sums checked