############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SPONGE_1.14.0.tar.gz && rm -rf SPONGE.buildbin-libdir && mkdir SPONGE.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPONGE.buildbin-libdir SPONGE_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SPONGE_1.14.0.zip && rm SPONGE_1.14.0.tar.gz SPONGE_1.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 5 4103k 5 221k 0 0 791k 0 0:00:05 --:--:-- 0:00:05 790k 66 4103k 66 2745k 0 0 2160k 0 0:00:01 0:00:01 --:--:-- 2160k 100 4103k 100 4103k 0 0 2155k 0 0:00:01 0:00:01 --:--:-- 2155k install for i386 Warning in untar2(tarfile, files, list, exdir, restore_times) : restoring symbolic link as a file copy * installing *source* package 'SPONGE' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SPONGE' finding HTML links ... done ceRNA_interactions html check_and_convert_expression_data html fn_elasticnet html fn_gene_miRNA_F_test html fn_get_model_coef html fn_get_rss html fn_get_shared_miRNAs html gene_expr html genes_pairwise_combinations html mir_expr html mir_interactions html mircode_ensg html mircode_symbol html precomputed_cov_matrices html precomputed_null_model html sample_zero_mscor_cov html sample_zero_mscor_data html sponge html sponge_build_null_model html sponge_compute_p_values html sponge_edge_centralities html sponge_gene_miRNA_interaction_filter html sponge_network html sponge_node_centralities html sponge_plot_network html sponge_plot_network_centralities html sponge_plot_simulation_results html sponge_run_benchmark html sponge_subsampling html targetscan_ensg html targetscan_symbol html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 Warning in untar2(tarfile, files, list, exdir, restore_times) : restoring symbolic link as a file copy * installing *source* package 'SPONGE' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'SPONGE' as SPONGE_1.14.0.zip * DONE (SPONGE) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'SPONGE' successfully unpacked and MD5 sums checked