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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SCOPE_1.4.0.tar.gz && rm -rf SCOPE.buildbin-libdir && mkdir SCOPE.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SCOPE.buildbin-libdir SCOPE_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SCOPE_1.4.0.zip && rm SCOPE_1.4.0.tar.gz SCOPE_1.4.0.zip
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install for i386

* installing *source* package 'SCOPE' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'DescTools::%:%' by 'foreach::%:%' when loading 'SCOPE'
** help
*** installing help indices
  converting help for package 'SCOPE'
    finding HTML links ... done
    QCmetric.scopeDemo                      html  
    Y_sim                                   html  
    coverageObj.scopeDemo                   html  
    get_bam_bed                             html  
    get_coverage_scDNA                      html  
    get_gc                                  html  
    get_gini                                html  
    get_mapp                                html  
    get_samp_QC                             html  
    iCN_sim                                 html  
    initialize_ploidy                       html  
    initialize_ploidy_group                 html  
    normObj.scopeDemo                       html  
    normalize_codex2_ns_noK                 html  
    normalize_scope                         html  
    normalize_scope_foreach                 html  
    normalize_scope_group                   html  
    perform_qc                              html  
    plot_EM_fit                             html  
    plot_iCN                                html  
    ref.scopeDemo                           html  
    ref_sim                                 html  
    segment_CBScs                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'DescTools::%:%' by 'foreach::%:%' when loading 'SCOPE'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'DescTools::%:%' by 'foreach::%:%' when loading 'SCOPE'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'SCOPE' ...
** testing if installed package can be loaded
Warning: replacing previous import 'DescTools::%:%' by 'foreach::%:%' when loading 'SCOPE'
* MD5 sums
packaged installation of 'SCOPE' as SCOPE_1.4.0.zip
* DONE (SCOPE)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'SCOPE' successfully unpacked and MD5 sums checked