############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r NanoMethViz -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data NanoMethViz ### ############################################################################## ############################################################################## * checking for file 'NanoMethViz/DESCRIPTION' ... OK * preparing 'NanoMethViz': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'ImportingData.Rmd' using rmarkdown [2021-10-14 4:06:14 PM] WARNING: creating tabix file on windows requires at least twice as much memory as total size of methylation data [2021-10-14 4:06:14 PM] creating methylation table processing C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpcT9Njk/Rinst1cf454861778/NanoMethViz/sample1_nanopolish.tsv.gz... guessing file is produced by nanopolish... processing C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpcT9Njk/Rinst1cf454861778/NanoMethViz/sample2_nanopolish.tsv.gz... guessing file is produced by nanopolish... [2021-10-14 4:06:15 PM] sorting methylation table Quitting from lines 54-66 (ImportingData.Rmd) Error: processing vignette 'ImportingData.Rmd' failed with diagnostics: Cannot open file for writing: * 'C:\Users\biocbuild\bbs-3.13-bioc\tmpdir\Rtmpq4OzP0\file1f081ff52515' --- failed re-building 'ImportingData.Rmd' --- re-building 'Introduction.Rmd' using rmarkdown --- finished re-building 'Introduction.Rmd' SUMMARY: processing the following file failed: 'ImportingData.Rmd' Error: Vignette re-building failed. Execution halted