############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/MAGeCKFlute_1.12.0.tar.gz && rm -rf MAGeCKFlute.buildbin-libdir && mkdir MAGeCKFlute.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MAGeCKFlute.buildbin-libdir MAGeCKFlute_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MAGeCKFlute_1.12.0.zip && rm MAGeCKFlute_1.12.0.tar.gz MAGeCKFlute_1.12.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 13 9886k 13 1293k 0 0 2033k 0 0:00:04 --:--:-- 0:00:04 2033k 48 9886k 48 4782k 0 0 2922k 0 0:00:03 0:00:01 0:00:02 2923k 92 9886k 92 9186k 0 0 3472k 0 0:00:02 0:00:02 --:--:-- 3471k 100 9886k 100 9886k 0 0 3573k 0 0:00:02 0:00:02 --:--:-- 3572k install for i386 * installing *source* package 'MAGeCKFlute' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'MAGeCKFlute' finding HTML links ... done BarView html BatchRemove html ConsistencyView html CutoffCalling html DensityDiffView html DensityView html EnrichAB html EnrichAnalyzer html EnrichSquare html EnrichedFilter html EnrichedGeneView html EnrichedView html FluteMLE html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/MAGeCKFlute.buildbin-libdir/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/flutemle.html FluteRRA html HeatmapView html IdentBarView html IncorporateDepmap html MAView html MapRatesView html NormalizeBeta html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/MAGeCKFlute.buildbin-libdir/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/normalizebeta.html OmitCommonEssential html RankView html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/MAGeCKFlute.buildbin-libdir/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/rankview.html ReadBeta html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/MAGeCKFlute.buildbin-libdir/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/readbeta.html ReadGMT html ReadRRA html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/MAGeCKFlute.buildbin-libdir/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/readrra.html ReadsgRRA html ResembleDepmap html ScatterView html Selector html SquareView html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/MAGeCKFlute.buildbin-libdir/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/squareview.html TransGeneID html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/MAGeCKFlute.buildbin-libdir/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/transGeneID.html ViolinView html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/MAGeCKFlute.buildbin-libdir/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/violinview.html VolcanoView html arrangePathview html enrich.GSE html enrich.HGT html enrich.ORT html getCols html getGeneAnn html getOrg html getOrtAnn html gsGetter html hclustView html noEnrichPlot html normalize.loess html reexports html retrieve_gs html sgRankView html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'MAGeCKFlute' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'MAGeCKFlute' as MAGeCKFlute_1.12.0.zip * DONE (MAGeCKFlute) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'MAGeCKFlute' successfully unpacked and MD5 sums checked