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### Running command:
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###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:GeneTonic.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings GeneTonic_1.4.1.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/GeneTonic.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GeneTonic/DESCRIPTION' ... OK
* this is package 'GeneTonic' version '1.4.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GeneTonic' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
gs_heatmap               8.32   0.27    8.58
gs_mds                   8.18   0.18    8.36
GeneTonic                7.86   0.39    8.42
ggs_backbone             7.53   0.27    9.69
ggs_graph                7.47   0.17    7.64
signature_volcano        7.29   0.20    7.49
summarize_ggs_hubgenes   6.86   0.19    7.05
gs_scores                6.37   0.20    6.58
export_for_iSEE          6.01   0.21    6.26
gs_scoresheat            5.86   0.25    6.10
gene_plot                5.72   0.16    5.88
gs_dendro                5.25   0.15    5.43
distill_enrichment       5.00   0.18    5.17
enhance_table            5.00   0.17    5.17
gs_summary_overview_pair 4.99   0.14    5.12
gs_volcano               4.95   0.15    5.11
gs_alluvial              4.82   0.19    5.00
checkup_gtl              4.91   0.10    5.04
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
ggs_backbone           7.93   0.29    8.55
gs_heatmap             7.67   0.20    7.87
summarize_ggs_hubgenes 7.41   0.29    7.68
gs_mds                 7.47   0.21    7.67
ggs_graph              7.26   0.24    7.50
signature_volcano      7.23   0.19    7.42
gs_scoresheat          7.17   0.11    7.28
gs_scores              6.54   0.14    6.67
GeneTonic              6.39   0.24    6.62
export_for_iSEE        5.83   0.14    5.97
gs_alluvial            5.46   0.19    5.64
gs_horizon             5.25   0.17    5.42
gs_dendro              5.13   0.17    5.29
checkup_gtl            4.99   0.18    5.15
checkup_GeneTonic      4.97   0.12    5.10
gs_volcano             4.93   0.10    5.01
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK