############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r FindMyFriends -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data FindMyFriends ### ############################################################################## ############################################################################## * checking for file 'FindMyFriends/DESCRIPTION' ... OK * preparing 'FindMyFriends': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'FindMyFriends_intro.Rmd' using rmarkdown Found more than one class "file" in cache; using the first, from namespace 'BiocGenerics' Also defined by 'filehash' Found more than one class "file" in cache; using the first, from namespace 'BiocGenerics' Also defined by 'filehash' Preclustering resulted in 3326 gene groups (1.31 seconds elapsed) Grouping resulted in 3138 gene groups (6.81 seconds elapsed) Total time elapsed was 8.14 seconds Presplitting resulted in 3160 gene groups (0.01 seconds elapsed) Splitting resulted in 3600 gene groups (1 minute and 54.14 seconds elapsed) Merging resulted in 3414 gene groups (2.92 seconds elapsed) Total time elapsed was 1 minute and 57.07 seconds Quitting from lines 357-361 (FindMyFriends_intro.Rmd) Error: processing vignette 'FindMyFriends_intro.Rmd' failed with diagnostics: info doesn't match any org info --- failed re-building 'FindMyFriends_intro.Rmd' SUMMARY: processing the following file failed: 'FindMyFriends_intro.Rmd' Error: Vignette re-building failed. Execution halted