############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CNVPanelizer_1.24.0.tar.gz && rm -rf CNVPanelizer.buildbin-libdir && mkdir CNVPanelizer.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVPanelizer.buildbin-libdir CNVPanelizer_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CNVPanelizer_1.24.0.zip && rm CNVPanelizer_1.24.0.tar.gz CNVPanelizer_1.24.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 87124 100 87124 0 0 550k 0 --:--:-- --:--:-- --:--:-- 552k install for i386 * installing *source* package 'CNVPanelizer' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CNVPanelizer' finding HTML links ... done Background html BedToGenomicRanges html BootList html CNVPanelizer-package html CNVPanelizerFromReadCounts html CNVPanelizerFromReadCountsHelper html CollectColumnFromAllReportTables html CombinedNormalizedCounts html IndexMultipleBams html NormalizedCounts html PlotBootstrapDistributions html ReadCountsFromBam html ReadXLSXToList html ReportTables html RunCNVPanelizerShiny html SelectReferenceSetByInterquartileRange html SelectReferenceSetByKmeans html SelectReferenceSetByPercentil html SelectReferenceSetFromReadCounts html StatusHeatmap html WriteListToXLSX html referenceReadCounts html sampleReadCounts html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CNVPanelizer' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'CNVPanelizer' as CNVPanelizer_1.24.0.zip * DONE (CNVPanelizer) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'CNVPanelizer' successfully unpacked and MD5 sums checked