############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf CNTools.buildbin-libdir && mkdir CNTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNTools.buildbin-libdir CNTools_1.48.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'CNTools' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c getratios.c -o getratios.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o CNTools.dll tmp.def getratios.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/CNTools.buildbin-libdir/00LOCK-CNTools/00new/CNTools/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'start' in package 'CNTools' Creating a new generic function for 'end' in package 'CNTools' Creating a generic function for 'genefilter' from package 'genefilter' in package 'CNTools' ** help *** installing help indices converting help for package 'CNTools' finding HTML links ... done CNSeg-class html RS-class html cor-methods html diffBy-methods html dist-methods html genefilter-methods html getRS-methods html madFilter-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CNTools' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c getratios.c -o getratios.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o CNTools.dll tmp.def getratios.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/CNTools.buildbin-libdir/CNTools/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'CNTools' as CNTools_1.48.0.zip * DONE (CNTools)