qsmooth
This is the development version of qsmooth; for the stable release version, see qsmooth.
Smooth quantile normalization
Bioconductor version: Development (3.20)
Smooth quantile normalization is a generalization of quantile normalization, which is average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.
Author: Stephanie C. Hicks [aut, cre] , Kwame Okrah [aut], Koen Van den Berge [ctb], Hector Corrada Bravo [aut]
, Rafael Irizarry [aut]
Maintainer: Stephanie C. Hicks <shicks19 at jhu.edu>
citation("qsmooth")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("qsmooth")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qsmooth")
The qsmooth user's guide | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | BatchEffect, Microarray, MultipleComparison, Normalization, Preprocessing, RNASeq, Sequencing, Software |
Version | 1.21.0 |
In Bioconductor since | BioC 3.9 (R-3.6) (5.5 years) |
License | GPL-3 |
Depends | R (>= 4.0) |
Imports | SummarizedExperiment, utils, sva, stats, methods, graphics, Hmisc |
System Requirements | |
URL |
See More
Suggests | bodymapRat, quantro, knitr, rmarkdown, BiocStyle, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | CleanUpRNAseq |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | qsmooth_1.21.0.tar.gz |
Windows Binary | qsmooth_1.21.0.zip (64-bit only) |
macOS Binary (x86_64) | qsmooth_1.21.0.tgz |
macOS Binary (arm64) | qsmooth_1.21.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/qsmooth |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/qsmooth |
Bioc Package Browser | https://code.bioconductor.org/browse/qsmooth/ |
Package Short Url | https://bioconductor.org/packages/qsmooth/ |
Package Downloads Report | Download Stats |