qPLEXanalyzer
This is the development version of qPLEXanalyzer; for the stable release version, see qPLEXanalyzer.
Tools for quantitative proteomics data analysis
Bioconductor version: Development (3.20)
Tools for TMT based quantitative proteomics data analysis.
Author: Matthew Eldridge [aut], Kamal Kishore [aut], Ashley Sawle [aut, cre]
Maintainer: Ashley Sawle <ads2202cu at gmail.com>
Citation (from within R, enter
citation("qPLEXanalyzer")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("qPLEXanalyzer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qPLEXanalyzer")
qPLEXanalyzer | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataImport, ImmunoOncology, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software |
Version | 1.23.0 |
In Bioconductor since | BioC 3.8 (R-3.5) (6 years) |
License | GPL-2 |
Depends | R (>= 4.0), Biobase, MSnbase |
Imports | assertthat, BiocGenerics, Biostrings, dplyr (>= 1.0.0), ggdendro, ggplot2, graphics, grDevices, IRanges, limma, magrittr, preprocessCore, purrr, RColorBrewer, readr, rlang, scales, stats, stringr, tibble, tidyr, tidyselect, utils |
System Requirements | |
URL | |
Bug Reports | https://github.com/crukci-bioinformatics/qPLEXanalyzer/issues |
See More
Suggests | gridExtra, knitr, qPLEXdata, rmarkdown, statmod, testthat, UniProt.ws, vdiffr |
Linking To | |
Enhances | |
Depends On Me | qPLEXdata |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | qPLEXanalyzer_1.23.0.tar.gz |
Windows Binary | qPLEXanalyzer_1.23.0.zip |
macOS Binary (x86_64) | qPLEXanalyzer_1.23.0.tgz |
macOS Binary (arm64) | qPLEXanalyzer_1.23.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/qPLEXanalyzer |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/qPLEXanalyzer |
Bioc Package Browser | https://code.bioconductor.org/browse/qPLEXanalyzer/ |
Package Short Url | https://bioconductor.org/packages/qPLEXanalyzer/ |
Package Downloads Report | Download Stats |