TransView
This is the development version of TransView; for the stable release version, see TransView.
Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets
Bioconductor version: Development (3.20)
This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.
Author: Julius Muller
Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>
Citation (from within R, enter
citation("TransView")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TransView")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TransView")
An introduction to TransView | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ChIPSeq, Clustering, DNAMethylation, DataImport, GeneExpression, ImmunoOncology, MethylSeq, Microarray, MultipleComparison, RNASeq, Sequencing, Software, Transcription, Visualization |
Version | 1.49.0 |
In Bioconductor since | BioC 2.11 (R-2.15) (12 years) |
License | GPL-3 |
Depends | methods, GenomicRanges |
Imports | BiocGenerics, S4Vectors(>= 0.9.25), IRanges, zlibbioc, gplots |
System Requirements | GNU make |
URL | http://bioconductor.org/packages/release/bioc/html/TransView.html |
See More
Suggests | RUnit, pasillaBamSubset, BiocManager |
Linking To | Rhtslib(>= 1.99.1) |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | TransView_1.49.0.tar.gz |
Windows Binary | TransView_1.49.0.zip (64-bit only) |
macOS Binary (x86_64) | TransView_1.49.0.tgz |
macOS Binary (arm64) | TransView_1.49.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/TransView |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TransView |
Bioc Package Browser | https://code.bioconductor.org/browse/TransView/ |
Package Short Url | https://bioconductor.org/packages/TransView/ |
Package Downloads Report | Download Stats |