MethylSeekR
This is the development version of MethylSeekR; for the stable release version, see MethylSeekR.
Segmentation of Bis-seq data
Bioconductor version: Development (3.20)
This is a package for the discovery of regulatory regions from Bis-seq data
Author: Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler
Maintainer: Lukas Burger <Lukas.Burger at fmi.ch>
Citation (from within R, enter
citation("MethylSeekR")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MethylSeekR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MethylSeekR")
MethylSeekR | R Script | |
Reference Manual |
Details
biocViews | DNAMethylation, MethylSeq, Sequencing, Software |
Version | 1.45.0 |
In Bioconductor since | BioC 2.12 (R-3.0) (11.5 years) |
License | GPL (>=2) |
Depends | rtracklayer(>= 1.16.3), parallel (>= 2.15.1), mhsmm (>= 0.4.4) |
Imports | IRanges(>= 1.16.3), BSgenome(>= 1.26.1), GenomicRanges(>= 1.10.5), geneplotter(>= 1.34.0), graphics (>= 2.15.2), grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2), utils (>= 2.15.2) |
System Requirements | |
URL |
See More
Suggests | BSgenome.Hsapiens.UCSC.hg18 |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | methylPipe, RnBeads |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MethylSeekR_1.45.0.tar.gz |
Windows Binary | MethylSeekR_1.45.0.zip (64-bit only) |
macOS Binary (x86_64) | MethylSeekR_1.45.0.tgz |
macOS Binary (arm64) | MethylSeekR_1.45.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MethylSeekR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MethylSeekR |
Bioc Package Browser | https://code.bioconductor.org/browse/MethylSeekR/ |
Package Short Url | https://bioconductor.org/packages/MethylSeekR/ |
Package Downloads Report | Download Stats |