MetaboAnnotation
This is the development version of MetaboAnnotation; for the stable release version, see MetaboAnnotation.
Utilities for Annotation of Metabolomics Data
Bioconductor version: Development (3.20)
High level functions to assist in annotation of (metabolomics) data sets. These include functions to perform simple tentative annotations based on mass matching but also functions to consider m/z and retention times for annotation of LC-MS features given that respective reference values are available. In addition, the function provides high-level functions to simplify matching of LC-MS/MS spectra against spectral libraries and objects and functionality to represent and manage such matched data.
Author: Michael Witting [aut] , Johannes Rainer [aut, cre]
, Andrea Vicini [aut]
, Carolin Huber [aut]
, Philippine Louail [aut]
, Nir Shachaf [ctb]
Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>
citation("MetaboAnnotation")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MetaboAnnotation")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MetaboAnnotation")
Annotation of MS-based Metabolomics Data | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Infrastructure, MassSpectrometry, Metabolomics, Software |
Version | 1.9.1 |
In Bioconductor since | BioC 3.15 (R-4.2) (2.5 years) |
License | Artistic-2.0 |
Depends | R (>= 4.0.0) |
Imports | BiocGenerics, MsCoreUtils, MetaboCoreUtils, ProtGenerics, methods, S4Vectors, Spectra(>= 1.13.2), BiocParallel, SummarizedExperiment, QFeatures, AnnotationHub, graphics, CompoundDb |
System Requirements | |
URL | https://github.com/RforMassSpectrometry/MetaboAnnotation |
Bug Reports | https://github.com/RforMassSpectrometry/MetaboAnnotation/issues |
See More
Suggests | testthat, knitr, msdata, BiocStyle, rmarkdown, plotly, shiny, shinyjs, DT, microbenchmark, mzR |
Linking To | |
Enhances | RMariaDB, RSQLite |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MetaboAnnotation_1.9.1.tar.gz |
Windows Binary | MetaboAnnotation_1.9.1.zip (64-bit only) |
macOS Binary (x86_64) | MetaboAnnotation_1.9.1.tgz |
macOS Binary (arm64) | MetaboAnnotation_1.9.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MetaboAnnotation |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MetaboAnnotation |
Bioc Package Browser | https://code.bioconductor.org/browse/MetaboAnnotation/ |
Package Short Url | https://bioconductor.org/packages/MetaboAnnotation/ |
Package Downloads Report | Download Stats |