MOSim
This is the development version of MOSim; for the stable release version, see MOSim.
Multi-Omics Simulation (MOSim)
Bioconductor version: Development (3.20)
MOSim package simulates multi-omic experiments that mimic regulatory mechanisms within the cell, allowing flexible experimental design including time course and multiple groups.
Author: Carolina Monzó [aut], Carlos Martínez [aut], Sonia Tarazona [cre, aut]
Maintainer: Sonia Tarazona <sotacam at gmail.com>
citation("MOSim")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MOSim")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MOSim")
MOSim | R Script | |
Wiki of how to use scMOSim | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ExperimentalDesign, RNASeq, Software, TimeCourse |
Version | 2.1.0 |
In Bioconductor since | BioC 3.10 (R-3.6) (5 years) |
License | GPL-3 |
Depends | R (>= 4.2.0) |
Imports | HiddenMarkov, zoo, IRanges, S4Vectors, dplyr, ggplot2, lazyeval, matrixStats, methods, rlang, stringi, stringr, scran, Seurat, Signac, edgeR, Rcpp |
System Requirements | |
URL | https://github.com/ConesaLab/MOSim |
Bug Reports | https://github.com/ConesaLab/MOSim/issues |
See More
Suggests | testthat, knitr, rmarkdown, codetools, BiocStyle, stats, utils, purrr, scales, tibble, tidyr, Biobase, scater, SingleCellExperiment, decor, markdown, Rsamtools, igraph, leiden, bluster |
Linking To | cpp11, Rcpp |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MOSim_2.1.0.tar.gz |
Windows Binary | MOSim_2.1.0.zip (64-bit only) |
macOS Binary (x86_64) | MOSim_2.1.0.tgz |
macOS Binary (arm64) | MOSim_2.1.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MOSim |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MOSim |
Bioc Package Browser | https://code.bioconductor.org/browse/MOSim/ |
Package Short Url | https://bioconductor.org/packages/MOSim/ |
Package Downloads Report | Download Stats |