ExperimentSubset
This is the development version of ExperimentSubset; for the stable release version, see ExperimentSubset.
Manages subsets of data with Bioconductor Experiment objects
Bioconductor version: Development (3.20)
Experiment objects such as the SummarizedExperiment or SingleCellExperiment are data containers for one or more matrix-like assays along with the associated row and column data. Often only a subset of the original data is needed for down-stream analysis. For example, filtering out poor quality samples will require excluding some columns before analysis. The ExperimentSubset object is a container to efficiently manage different subsets of the same data without having to make separate objects for each new subset.
Author: Irzam Sarfraz [aut, cre] , Muhammad Asif [aut, ths]
, Joshua D. Campbell [aut]
Maintainer: Irzam Sarfraz <irzam9095 at gmail.com>
citation("ExperimentSubset")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ExperimentSubset")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ExperimentSubset")
An introduction to ExperimentSubset class | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | DataImport, DataRepresentation, Infrastructure, Software |
Version | 1.15.0 |
In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
License | MIT + file LICENSE |
Depends | R (>= 4.0.0), SummarizedExperiment, SingleCellExperiment, SpatialExperiment, TreeSummarizedExperiment |
Imports | methods, Matrix, S4Vectors |
System Requirements | |
URL |
See More
Suggests | BiocStyle, knitr, rmarkdown, testthat, covr, stats, scran, scater, scds, TENxPBMCData, airway |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | ExperimentSubset_1.15.0.tar.gz |
Windows Binary | ExperimentSubset_1.15.0.zip |
macOS Binary (x86_64) | ExperimentSubset_1.15.0.tgz |
macOS Binary (arm64) | ExperimentSubset_1.15.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/ExperimentSubset |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ExperimentSubset |
Bioc Package Browser | https://code.bioconductor.org/browse/ExperimentSubset/ |
Package Short Url | https://bioconductor.org/packages/ExperimentSubset/ |
Package Downloads Report | Download Stats |