# 1.7.2

## Fix

* Error in isoNetwork example code.

# 1.7.2

## Feature

* Better looking for isoPlotNet function.
* Improve docs for mm isomiR plot. Thanks to @mshadbolt.
* Add option to remove ambiguos reads.
* Add option to get other gene ID when retrieving miRNA targets.
* Improve docs to explain better isoPlot figures. Thanks @mshadbolt.
* Add mirna prediction using targetscan annotation package in BioC.

## Fixes

* Fix examples for findTargets.
* Error in names columns for isoNetwork analysis.
* Remove sequences with Ns in add column.
* Move correction functions to independent package scounts.

# 1.7.1

## Fixes

* Use limma::voom when number of samples is high. Set up by user.
* Fix error when table is empty after filtering bad hits.


# 1.5.5


FIX

    o Migrate vignette to new BiocStyle
    o Remove unused function join_all
    o Use parameter not integer number
    o Using testthat for unit test

# 1.5.4


FEATURES

    o Better documentation for isoCorrection function. Add
      proper authors and citation.


# 1.5.3


FEATURES

    o Better colors for polar plot of isomiRs

FIX
    o Fix notes during R CHECK for variables inside dplyr/ggplot functions
    o Use roxygen2 for NAMESPACE

# 1.5.2


FIX
    o Remove TMB dependency

# 1.5.1


FEATURES

    o Add new polar figure to plot all isomiRs at the same time
    o Add NLQO distribution to correct expression knowing sequencing
      bias [Argyropoulos et al, 2017]
    o Improve data documentation


# 1.3.5


FEATURES

    o Add isomiRs naming to documentation
    o Add design to the object to get better usability
    o Remove non-template addition with C/G nucleotides by default (canonicalAdd)
    o Remove sequences with mutations and more than one miRNA hit

# 1.3.4


FIXES

    o Fix removing false mutations from the raw files. Change sequences
    to correct the nucleotide at the specific position.

FEATURES

    o Improve code to remove error sequencing from raw data
    o Improve code to show the raw data with isoSelect

# 1.3.3


FIXES

    o Fix data with correct headers name

# 1.3.2


OTHERS

    o Preparing migration to new isomiRs naming using mirTOP naming system

# 1.3.1


OTHERS

    o Add option to IsomirDataSeqFromFiles to decide
    when to consider mutations as reals

# 1.1.5


OTHERS

    o Suppress message from readr when reading
    o Add instruction of how to create DESeq2 object from ids one.

# 1.1.4


OTHERS

    o Add mRNA-miRNA integration

# 1.1.2


OTHERS

    o Update version dependecy for packages

# 0.99.18


BUG FIXES

    o Avoid removing isomiRs with mutation and reference non-detected

# 0.99.13


NEW FEATURES

    o Modify main class to have all the information in metadata

    o Improve docs with more information in return values

    o Add minimum data to test creation of main class