Changes in version 1.2.2 ---------------------------------------------------------------- CODE *`test_subjectReport` update after subjectReport modification. Changes in version 1.2.1 ---------------------------------------------------------------- CODE *`subjectReport` bug removed over axis.text.x duplicated parameter. Changes in version 1.2.0 ---------------------------------------------------------------- VERSION * Bump version after creating 3.4 release branch Changes in version 1.1.1 ---------------------------------------------------------------- CODE * `PAM50Filtrate` now supports a single sample i.e. `drop=FALSE` (Thanks to anonymous reviewer). * `PAM50Classify` now Force filtrate if not already performed. In addition, for `std="median"` checks for appropriate annotation i. e. EntrezGene.ID-Symbol tuples for the same EntrezGene.ID have the same Symbol (Thanks to anonymous reviewer). * `PAM50Permutate` now checks for previous call to `classify` (Thanks to anonymous reviewer). DOCUMENTATION * The vignette has been update in order to include two additional examples (single subject and custom data) and computational requirements (e.g. memory, time) (Thanks to anonymous reviewer). Changes in version 1.1.0 ---------------------------------------------------------------- VERSION * Bump version after creating 3.4 devel branch Changes in version 1.0.0 ---------------------------------------------------------------- VERSION * Bump version after creating 3.3 release branch Changes in version 0.99.6 ---------------------------------------------------------------- VERSION * Bump versions prior to creation of 3.3 branch Changes in version 0.99.5 ---------------------------------------------------------------- DEPENDENCIES * R (>= 3.3.0) now added (Thanks to Valerie Oberchain). Changes in version 0.99.4 ---------------------------------------------------------------- DEPENDENCIES * Depends, Imports and NAMESPACES libraries were modified following codetoolsBioC suggestions (Thanks to Valerie Oberchain). * `cowplot` was used in subjectReport function as textGrob update broke the code. DOCUMENTATION * Documentation updated (Thanks to Valerie Oberchain). CODE * Modification according to Bioconductor style: -@ only used within accessor functions. -No requiere(.) inside functions -prototype and validity for each class definition. (Thanks to Valerie Oberchain). Changes in version 0.99.3 ---------------------------------------------------------------- DEPENDENCIES * `BiocParallel (>= 1.3.13)` has been updated to feedback the user with progressbar if verbose=TRUE in permutate (Thanks to Valerie Oberchain). DESCRIPTION * `StatisticalMethod` has been removed from biocViews. Changes in version 0.99.2 ---------------------------------------------------------------- DEPENDENCIES * `R (>= 3.x.y)` has been updated to 3.2 * Imports: `BiocParallel` has replaced `parallel` (Thanks to Valerie Obenchain). Changes in version 0.99.1 ---------------------------------------------------------------- DOCUMENTATION & CODE * Minor modifications to cope with BiocCheck policies. * RUnit tests were added. Changes in version 0.99.0 ---------------------------------------------------------------- DOCUMENTATION * `NEWS` file was added. * First functional version