Package: BSgenome.Tguttata.UCSC.taeGut1
Title: Full genome sequences for Taeniopygia guttata (UCSC version taeGut1)
Description: Full genome sequences for Taeniopygia guttata (Zebra finch) as provided by UCSC (taeGut1, Jul. 2008) and stored in Biostrings objects.
Version: 1.4.2
organism: Taeniopygia guttata
common_name: Zebra finch
provider: UCSC
provider_version: taeGut1
release_date: Jul. 2008
release_name: WUSTL v3.2.4
source_url: http://hgdownload.soe.ucsc.edu/goldenPath/taeGut1/bigZips/
organism_biocview: Taeniopygia_guttata
BSgenomeObjname: Tguttata
seqnames: paste0("chr", c(1, "1A", "1B", 2:4, "4A", 5:28, "LGE22", "LG2", "LG5", "Z", "M", "Un", paste0(c(1, "1A", "1B", 2:4, "4A", 5:28, "LGE22", "Z"), "_random")))
circ_seqs: "chrM"
SrcDataFiles: chromFa.tar.gz from http://hgdownload.soe.ucsc.edu/goldenPath/taeGut1/bigZips/
PkgExamples: genome$chr1  # same as genome[["chr1"]]
seqs_srcdir: /fh/fast/morgan_m/BioC/BSgenomeForge/srcdata/BSgenome.Tguttata.UCSC.taeGut1/seqs