Package: BSgenome.Hsapiens.NCBI.GRCh38 Title: Full genome sequences for Homo sapiens (GRCh38) Description: Full genome sequences for Homo sapiens (Human) as provided by NCBI (GRCh38, 2013-12-17) and stored in Biostrings objects. Version: 1.4.2 organism: Homo sapiens common_name: Human provider: NCBI provider_version: GRCh38 release_date: 2013-12-17 release_name: Genome Reference Consortium Human Build 38 source_url: ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Homo_sapiens/GRCh38/ organism_biocview: Homo_sapiens BSgenomeObjname: Hsapiens seqnames: c("1", "2", "3", "4", "5", "6", "7", "8", "9", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "X", "Y", "MT", "HSCHR1_CTG1_UNLOCALIZED", "HSCHR1_CTG2_UNLOCALIZED", "HSCHR1_CTG3_UNLOCALIZED", "HSCHR1_CTG4_UNLOCALIZED", "HSCHR1_CTG5_UNLOCALIZED", "HSCHR1_CTG6_UNLOCALIZED", "HSCHR1_CTG7_UNLOCALIZED", "HSCHR1_CTG8_UNLOCALIZED", "HSCHR1_CTG9_UNLOCALIZED", "HSCHR2_RANDOM_CTG1", "HSCHR2_RANDOM_CTG2", "HSCHR3UN_CTG2", "HSCHR4_RANDOM_CTG4", "HSCHR5_RANDOM_CTG1", "HSCHR9_UNLOCALIZED_CTG1", "HSCHR9_UNLOCALIZED_CTG2", "HSCHR9_UNLOCALIZED_CTG3", "HSCHR9_UNLOCALIZED_CTG4", "HSCHR11_CTG1_UNLOCALIZED", "HSCHR14_CTG1_UNLOCALIZED", "HSCHR14_CTG2_UNLOCALIZED", "HSCHR14_CTG3_UNLOCALIZED", "HSCHR14_CTG4_UNLOCALIZED", "HSCHR14_CTG5_UNLOCALIZED", "HSCHR14_CTG6_UNLOCALIZED", "HSCHR14_CTG7_UNLOCALIZED", "HSCHR14_CTG8_UNLOCALIZED", "HSCHR15_RANDOM_CTG1", "HSCHR16_RANDOM_CTG1", "HSCHR17_RANDOM_CTG3", "HSCHR17_RANDOM_CTG4", "HSCHR17_RANDOM_CTG5", "HSCHR22_UNLOCALIZED_CTG1", "HSCHR22_UNLOCALIZED_CTG2", "HSCHR22_UNLOCALIZED_CTG3", "HSCHR22_UNLOCALIZED_CTG4", "HSCHR22_UNLOCALIZED_CTG5", "HSCHR22_UNLOCALIZED_CTG6", "HSCHR22_UNLOCALIZED_CTG7", "HSCHR22_UNLOCALIZED_CTG8", "HSCHR22_UNLOCALIZED_CTG9", "HSCHRY_RANDOM_CTG1", "HSCHRUN_RANDOM_100", "HSCHRUN_RANDOM_101", "HSCHRUN_RANDOM_102", "HSCHRUN_RANDOM_103", "HSCHRUN_RANDOM_104", "HSCHRUN_RANDOM_105", "HSCHRUN_RANDOM_106", "HSCHRUN_RANDOM_107", "HSCHRUN_RANDOM_108", "HSCHRUN_RANDOM_109", "HSCHRUN_RANDOM_110", "HSCHRUN_RANDOM_111", "HSCHRUN_RANDOM_112", "HSCHRUN_RANDOM_113", "HSCHRUN_RANDOM_114", "HSCHRUN_RANDOM_115", "HSCHRUN_RANDOM_116", "HSCHRUN_RANDOM_117", "HSCHRUN_RANDOM_118", "HSCHRUN_RANDOM_119", "HSCHRUN_RANDOM_120", "HSCHRUN_RANDOM_121", "HSCHRUN_RANDOM_122", "HSCHRUN_RANDOM_123", "HSCHRUN_RANDOM_124", "HSCHRUN_RANDOM_125", "HSCHRUN_RANDOM_126", "HSCHRUN_RANDOM_127", "HSCHRUN_RANDOM_128", "HSCHRUN_RANDOM_129", "HSCHRUN_RANDOM_130", "HSCHRUN_RANDOM_131", "HSCHRUN_RANDOM_132", "HSCHRUN_RANDOM_133", "HSCHRUN_RANDOM_134", "HSCHRUN_RANDOM_135", "HSCHRUN_RANDOM_136", "HSCHRUN_RANDOM_137", "HSCHRUN_RANDOM_138", "HSCHRUN_RANDOM_139", "HSCHRUN_RANDOM_140", "HSCHRUN_RANDOM_141", "HSCHRUN_RANDOM_142", "HSCHRUN_RANDOM_143", "HSCHRUN_RANDOM_144", "HSCHRUN_RANDOM_145", "HSCHRUN_RANDOM_146", "HSCHRUN_RANDOM_147", "HSCHRUN_RANDOM_148", "HSCHRUN_RANDOM_149", "HSCHRUN_RANDOM_154", "HSCHRUN_RANDOM_155", "HSCHRUN_RANDOM_156", "HSCHRUN_RANDOM_157", "HSCHRUN_RANDOM_158", "HSCHRUN_RANDOM_159", "HSCHRUN_RANDOM_160", "HSCHRUN_RANDOM_161", "HSCHRUN_RANDOM_162", "HSCHRUN_RANDOM_163", "HSCHRUN_RANDOM_164", "HSCHRUN_RANDOM_165", "HSCHRUN_RANDOM_166", "HSCHRUN_RANDOM_167", "HSCHRUN_RANDOM_168", "HSCHRUN_RANDOM_169", "HSCHRUN_RANDOM_170", "HSCHRUN_RANDOM_171", "HSCHRUN_RANDOM_172", "HSCHRUN_RANDOM_173", "HSCHRUN_RANDOM_174", "HSCHRUN_RANDOM_175", "HSCHRUN_RANDOM_176", "HSCHRUN_RANDOM_177", "HSCHRUN_RANDOM_178", "HSCHRUN_RANDOM_179", "HSCHRUN_RANDOM_180", "HSCHRUN_RANDOM_181", "HSCHRUN_RANDOM_182", "HSCHRUN_RANDOM_183", "HSCHRUN_RANDOM_184", "HSCHRUN_RANDOM_185", "HSCHRUN_RANDOM_186", "HSCHRUN_RANDOM_187", "HSCHRUN_RANDOM_188", "HSCHRUN_RANDOM_189", "HSCHRUN_RANDOM_190", "HSCHRUN_RANDOM_191", "HSCHRUN_RANDOM_192", "HSCHRUN_RANDOM_193", "HSCHRUN_RANDOM_194", "HSCHRUN_RANDOM_195", "HSCHRUN_RANDOM_196", "HSCHRUN_RANDOM_197", "HSCHRUN_RANDOM_198", "HSCHRUN_RANDOM_199", "HSCHRUN_RANDOM_200", "HSCHRUN_RANDOM_201", "HSCHRUN_RANDOM_202", "HSCHRUN_RANDOM_203", "HSCHRUN_RANDOM_204", "HSCHRUN_RANDOM_CTG1", "HSCHRUN_RANDOM_CTG10", "HSCHRUN_RANDOM_CTG11", "HSCHRUN_RANDOM_CTG16", "HSCHRUN_RANDOM_CTG17", "HSCHRUN_RANDOM_CTG19", "HSCHRUN_RANDOM_CTG2", "HSCHRUN_RANDOM_CTG20", "HSCHRUN_RANDOM_CTG21", "HSCHRUN_RANDOM_CTG22", "HSCHRUN_RANDOM_CTG23", "HSCHRUN_RANDOM_CTG24", "HSCHRUN_RANDOM_CTG25", "HSCHRUN_RANDOM_CTG26", "HSCHRUN_RANDOM_CTG27", "HSCHRUN_RANDOM_CTG28", "HSCHRUN_RANDOM_CTG29", "HSCHRUN_RANDOM_CTG30", "HSCHRUN_RANDOM_CTG33", "HSCHRUN_RANDOM_CTG34", "HSCHRUN_RANDOM_CTG35", "HSCHRUN_RANDOM_CTG36", "HSCHRUN_RANDOM_CTG4", "HSCHRUN_RANDOM_CTG42", "HSCHRUN_RANDOM_CTG6", "HSCHRUN_RANDOM_CTG9", "HSCHR1_1_CTG3", "HSCHR1_2_CTG3", "HSCHR1_1_CTG11", "HSCHR1_4_CTG31", "HSCHR1_1_CTG31", "HSCHR1_2_CTG31", "HSCHR1_3_CTG31", "HSCHR1_4_CTG32_1", "HSCHR1_3_CTG32_1", "HSCHR1_1_CTG32_1", "HSCHR1_2_CTG32_1", "HSCHR2_2_CTG1", "HSCHR2_3_CTG1", "HSCHR2_4_CTG1", "HSCHR2_1_CTG1", "HSCHR2_1_CTG5", "HSCHR2_1_CTG7", "HSCHR2_5_CTG7_2", "HSCHR2_4_CTG7_2", "HSCHR2_3_CTG7_2", "HSCHR2_2_CTG7_2", "HSCHR2_1_CTG7_2", "HSCHR2_3_CTG15", "HSCHR2_1_CTG15", "HSCHR3_1_CTG1", "HSCHR3_3_CTG1", "HSCHR3_4_CTG2_1", "HSCHR3_1_CTG2_1", "HSCHR3_2_CTG2_1", "HSCHR3_3_CTG2_1", "HSCHR3_5_CTG2_1", "HSCHR3_1_CTG3", "HSCHR3_2_CTG3", "HSCHR3_9_CTG3", "HSCHR4_1_CTG4", "HSCHR4_1_CTG6", "HSCHR4_1_CTG8_1", "HSCHR4_1_CTG9", "HSCHR4_4_CTG12", "HSCHR4_1_CTG12", "HSCHR4_2_CTG12", "HSCHR4_5_CTG12", "HSCHR4_3_CTG12", "HSCHR5_5_CTG1", "HSCHR5_4_CTG1", "HSCHR5_3_CTG1", "HSCHR5_1_CTG1", "HSCHR5_2_CTG1", "HSCHR5_6_CTG1", "HSCHR5_2_CTG1_1", "HSCHR5_3_CTG1_1", "HSCHR5_4_CTG1_1", "HSCHR5_1_CTG5", "HSCHR5_2_CTG5", "HSCHR6_MHC_APD_CTG1", "HSCHR6_1_CTG7", "HSCHR6_1_CTG6", "HSCHR6_1_CTG2", "HSCHR6_1_CTG8", "HSCHR6_1_CTG9", "HSCHR6_1_CTG3", "HSCHR6_1_CTG4", "HSCHR6_1_CTG5", "HSCHR7_1_CTG1", "HSCHR7_2_CTG4_4", "HSCHR7_1_CTG4_4", "HSCHR7_1_CTG6", "HSCHR7_2_CTG6", "HSCHR7_3_CTG6", "HSCHR7_2_CTG7", "HSCHR7_1_CTG7", "HSCHR8_4_CTG1", "HSCHR8_2_CTG1", "HSCHR8_1_CTG1", "HSCHR8_8_CTG1", "HSCHR8_3_CTG1", "HSCHR8_9_CTG1", "HSCHR8_1_CTG6", "HSCHR8_1_CTG7", "HSCHR8_5_CTG7", "HSCHR8_6_CTG7", "HSCHR8_4_CTG7", "HSCHR8_3_CTG7", "HSCHR8_2_CTG7", "HSCHR9_1_CTG1", "HSCHR9_1_CTG2", "HSCHR9_1_CTG3", "HSCHR9_1_CTG4", "HSCHR9_1_CTG5", "HSCHR10_1_CTG1", "HSCHR10_1_CTG3", "HSCHR10_1_CTG2", "HSCHR10_1_CTG4", "HSCHR11_1_CTG8", "HSCHR11_1_CTG6", "HSCHR11_1_CTG7", "HSCHR11_1_CTG5", "HSCHR11_1_CTG1_1", "HG142_HG150_NOVEL_TEST", "HG151_NOVEL_TEST", "HSCHR11_1_CTG3", "HSCHR11_1_CTG2", "HSCHR12_1_CTG1", "HSCHR12_2_CTG2", "HSCHR12_5_CTG2", "HSCHR12_1_CTG2", "HSCHR12_4_CTG2", "HSCHR12_1_CTG2_1", "HSCHR12_2_CTG2_1", "HSCHR12_3_CTG2_1", "HSCHR12_6_CTG2_1", "HSCHR12_4_CTG2_1", "HSCHR12_5_CTG2_1", "HSCHR12_7_CTG2_1", "HSCHR13_1_CTG3", "HSCHR13_1_CTG2", "HSCHR13_1_CTG6", "HSCHR13_1_CTG4", "HSCHR13_1_CTG1", "HSCHR13_1_CTG5", "HSCHR14_1_CTG1", "HSCHR14_7_CTG1", "HSCHR14_2_CTG1", "HSCHR14_3_CTG1", "HSCHR15_1_CTG1", "HSCHR15_3_CTG3", "HSCHR15_1_CTG3", "HSCHR15_1_CTG8", "HSCHR15_3_CTG8", "HSCHR15_2_CTG8", "HSCHR15_5_CTG8", "HSCHR16_CTG2", "HSCHR16_4_CTG1", "HSCHR16_3_CTG1", "HSCHR16_1_CTG1", "HSCHR16_1_CTG3_1", "HSCHR16_2_CTG3_1", "HSCHR17_1_CTG1", "HSCHR17_2_CTG2", "HSCHR17_1_CTG2", "HSCHR17_7_CTG4", "HSCHR17_4_CTG4", "HSCHR17_5_CTG4", "HSCHR17_1_CTG4", "HSCHR17_1_CTG5", "HSCHR17_2_CTG4", "HSCHR17_8_CTG4", "HSCHR17_9_CTG4", "HSCHR17_3_CTG4", "HSCHR17_1_CTG9", "HSCHR18_4_CTG1_1", "HSCHR18_1_CTG1_1", "HSCHR18_2_CTG1_1", "HSCHR18_2_CTG2", "HSCHR18_1_CTG2", "HSCHR18_1_CTG2_1", "HSCHR18_2_CTG2_1", "HSCHR18_3_CTG2_1", "HSCHR19_5_CTG2", "HSCHR19_4_CTG2", "HSCHR19_1_CTG2", "HSCHR19_2_CTG2", "HSCHR19_3_CTG2", "HSCHR19_1_CTG3_1", "HSCHR19_2_CTG3_1", "HSCHR19_3_CTG3_1", "HSCHR19LRC_COX1_CTG3_1", "HSCHR20_1_CTG1", "HSCHR20_1_CTG2", "HSCHR20_1_CTG4", "HSCHR20_1_CTG3", "HSCHR21_1_CTG1_1", "HSCHR21_8_CTG1_1", "HSCHR21_6_CTG1_1", "HSCHR21_2_CTG1_1", "HSCHR21_3_CTG1_1", "HSCHR21_4_CTG1_1", "HSCHR21_5_CTG2", "HSCHR22_1_CTG3", "HSCHR22_1_CTG6", "HSCHR22_1_CTG7", "HSCHR22_1_CTG4", "HSCHR22_1_CTG5", "HSCHR22_1_CTG2", "HSCHR22_1_CTG1", "HSCHRX_1_CTG3", "HSCHRX_2_CTG12", "HSCHR1_ALT2_1_CTG32_1", "HSCHR2_2_CTG7", "HSCHR2_2_CTG15", "HSCHR3_3_CTG3", "HSCHR4_6_CTG12", "HSCHR5_1_CTG1_1", "HSCHR5_3_CTG5", "HSCHR6_MHC_COX_CTG1", "HSCHR7_2_CTG1", "HSCHR8_6_CTG1", "HSCHR8_5_CTG1", "HSCHR11_2_CTG1", "HSCHR11_2_CTG1_1", "HSCHR12_3_CTG2", "HSCHR15_2_CTG3", "HSCHR15_4_CTG8", "HSCHR17_2_CTG1", "HSCHR17_3_CTG2", "HSCHR17_10_CTG4", "HSCHR17_6_CTG4", "HSCHR17_2_CTG5", "HSCHR18_ALT21_CTG2_1", "HSCHR18_ALT2_CTG2_1", "HSCHR19LRC_COX2_CTG3_1", "HSCHR22_2_CTG1", "HSCHRX_2_CTG3", "HSCHR3_4_CTG3", "HSCHR4_7_CTG12", "HSCHR6_MHC_DBB_CTG1", "HSCHR8_7_CTG1", "HSCHR11_3_CTG1", "HSCHR19LRC_LRC_I_CTG3_1", "HSCHR22_3_CTG1", "HSCHR3_5_CTG3", "HSCHR6_MHC_MANN_CTG1", "HSCHR19LRC_LRC_J_CTG3_1", "HSCHR3_6_CTG3", "HSCHR6_MHC_MCF_CTG1", "HSCHR19LRC_LRC_S_CTG3_1", "HSCHR3_7_CTG3", "HSCHR6_MHC_QBL_CTG1", "HSCHR19LRC_LRC_T_CTG3_1", "HSCHR3_8_CTG3", "HSCHR6_MHC_SSTO_CTG1", "HSCHR19LRC_PGF1_CTG3_1", "HSCHR6_8_CTG1", "HSCHR19LRC_PGF2_CTG3_1", "HSCHR19_4_CTG3_1", "HSCHR19KIR_FH15_B_HAP_CTG3_1", "HSCHR19KIR_G085_A_HAP_CTG3_1", "HSCHR19KIR_G085_BA1_HAP_CTG3_1", "HSCHR19KIR_G248_A_HAP_CTG3_1", "HSCHR19KIR_G248_BA2_HAP_CTG3_1", "HSCHR19KIR_GRC212_AB_HAP_CTG3_1", "HSCHR19KIR_GRC212_BA1_HAP_CTG3_1", "HSCHR19KIR_LUCE_A_HAP_CTG3_1", "HSCHR19KIR_LUCE_BDEL_HAP_CTG3_1", "HSCHR19KIR_RSH_A_HAP_CTG3_1", "HSCHR19KIR_RSH_BA2_HAP_CTG3_1", "HSCHR19KIR_T7526_A_HAP_CTG3_1", "HSCHR19KIR_T7526_BDEL_HAP_CTG3_1", "HSCHR19KIR_ABC08_A1_HAP_CTG3_1", "HSCHR19KIR_ABC08_AB_HAP_C_P_CTG3_1", "HSCHR19KIR_ABC08_AB_HAP_T_P_CTG3_1", "HSCHR19KIR_FH05_A_HAP_CTG3_1", "HSCHR19KIR_FH05_B_HAP_CTG3_1", "HSCHR19KIR_FH06_A_HAP_CTG3_1", "HSCHR19KIR_FH06_BA1_HAP_CTG3_1", "HSCHR19KIR_FH08_A_HAP_CTG3_1", "HSCHR19KIR_FH08_BAX_HAP_CTG3_1", "HSCHR19KIR_FH13_A_HAP_CTG3_1", "HSCHR19KIR_FH13_BA2_HAP_CTG3_1", "HSCHR19KIR_FH15_A_HAP_CTG3_1", "HSCHR19KIR_RP5_B_HAP_CTG3_1") circ_seqs: "MT" SrcDataFiles: GCA_000001405.15_GRCh38_top-level.fna.gz from ftp://ftp.ncbi.nlm.nih.gov/genbank/genomes/Eukaryotes/vertebrates_mammals/Homo_sapiens/GRCh38 PkgExamples: genome[["1"]] seqs_srcdir: /fh/fast/morgan_m/BioC/BSgenomeForge/srcdata/BSgenome.Hsapiens.NCBI.GRCh38/seqs ondisk_seq_format: rda