signatureSearchData
Datasets for signatureSearch package
Bioconductor version: Release (3.20)
CMAP/LINCS hdf5 databases and other annotations used for signatureSearch software package.
Author: Yuzhu Duan <yduan004 at ucr.edu>, Brendan Gongol <bgong001 at ucr.edu>, Thomas Girke <thomas.girke at ucr.edu>
Maintainer: Brendan Gongol <bgong001 at ucr.edu>
Citation (from within R, enter
citation("signatureSearchData")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("signatureSearchData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("signatureSearchData")| signatureSearchData | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData |
| Version | 1.20.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.6) |
| Imports | ExperimentHub, utils, affy, limma, Biobase, magrittr, dplyr, R.utils, stats, rhdf5 |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | DFD |
| Suggests Me | signatureSearch |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | signatureSearchData_1.20.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/signatureSearchData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/signatureSearchData |
| Package Short Url | https://bioconductor.org/packages/signatureSearchData/ |
| Package Downloads Report | Download Stats |