Changes in version 1.3.1                        

  - Added newly published paper.

                        Changes in version 1.3.0                        

Development version in Bioconductor 3.18

                        Changes in version 1.1.2                        

BUG FIXES

  - Fixed documentation of argument jitter in TIS() and
    simulate_background_cells().
  - Fixed incorrectly plotted image in README.

                        Changes in version 1.1.1                        

SIGIFICANT USER CHANGE

  - simulate_background_cells() added an option (method = "Even") to
    simulate evenly spaced background images. This change is accompanied
    with addition of two parameters, method - to choose the background
    cell distribution and jitter

  - the parameter to simulate evenly spaced background cells. Tutorials
    and function TIS() were modified accordingly.

                       Changes in version 0.99.5                        

SIGNIFICANT USER CHANGE

  - TIS() only plots one plot when arg plot_image is TRUE.

                       Changes in version 0.99.4                        

SIGNIFICANT USER CHANGE

  - Added an optional parameter plot_image to
    simulate_background_cells().

                       Changes in version 0.99.3                        

NO SIGNIFICANT CHANGE

                       Changes in version 0.99.2                        

NEW FEATURES

  - Added utils.R file to store internal functions.

SIGNIFICANT USER-VISIBLE CHANGES

  - Updated the main object class from SingleCellExperiment to
    SpatialExperiment.
  - Changed the parameter Phenotype to Cell.Type.

                       Changes in version 0.99.1                        

NEW FEATURES

  - Added parameter validity checks.

SIGNIFICANT USER-VISIBLE CHANGES

  - Improved parameter descriptions.

BUG FIXES

  - None

                       Changes in version 0.99.0                        

NEW FEATURES

  - This is the first version of spaSim.