Changes in version 1.11.1                        

CHANGES

  - Parallel reading is added to readBismark-method.

BUG FIX

  - Some bugs are fixed in methHMMCMC-method to avoid creating infinity.

                        Changes in version 1.9.2                        

CHANGES SINCE LAST RELEASE

  - Made compatible with R 4 following changes in some codes in R.
  - Citation is updated.

                        Changes in version 1.3.1                        

CHANGES AND BUG FIX

  - A new citation is added.
  - Several bugs are fixed.

                       Changes in version 0.99.17                       

CHANGES SINCE LAST RELEASE

  - A new function, compareDMCs() is added for plotting DMCs and average
    predicted methylation for for group comparison.
  - The manhattanDMCs() function is modified to plot regions of
    interests.

                       Changes in version 0.99.16                       

CHANGES SINCE LAST RELEASE

  - The function findDMCs() is fixed for memory management.
  - The function methEM() is fixed for creating NaN in computing
    binomial probabilities.

                       Changes in version 0.99.15                       

CHANGES SINCE LAST RELEASE

  - An option is added to findDMC that lets the user enters a function
    to calculate weights for GLM using the variances obtianed from MCMC.

                       Changes in version 0.99.14                       

CHANGES SINCE LAST RELEASE

  - Several issues are fixed.
  - Some modification are done to expedite the speed of processes.
  - Instead of the parallel package, the BioParallel package is used.

                       Changes in version 0.99.9                        

CHANGES SINCE LAST RELEASE

  - Some parameters in examples are changed to make the running time
    faster.
  - The BSData-method is changed to cBSData-method.
  - The BSDMCs-method is changed to cBSDMCs-method.

                       Changes in version 0.99.0                        

CHANGES SINCE LAST RELEASE

  - We have refined some of the codes to speed up the running the
    package.