Changes in version 1.5.1                        

NEW FEATURES

  - processSim() method generates simulated samples with copy number
    profiles derived from a specific sample.

SIGNIFICANT USER-VISIBLE CHANGES

  - None

BUG FIXES

  - None

                        Changes in version 0.1.6                        

NEW FEATURES

  - calculateLog2ratioMetric() method enables log2 ratio metric
    calculation using similar workflow than
    calculateOverlapRegionsMetric() method.

SIGNIFICANT USER-VISIBLE CHANGES

  - plotMetric() replaces plotOverlapMetric() method. The new method can
    plot all metrics (state call metrics and log2 ratio metrics).
  - Vignette section 'Workflow for metrics calculated using the level of
    amplification/deletion' is complete.
  - New citing section in README and vignette refering to published
    F1000Research poster
    (http://www.doi.org/10.7490/f1000research.1118704.1).
  - Instead of calculating distance, log2 ratio metrics are calculated
    distance-based metrics (1/(1+distance)).

BUG FIXES

  - None

                        Changes in version 0.1.4                        

NEW FEATURES

  - None

SIGNIFICANT USER-VISIBLE CHANGES

  - New website https://krasnitzlab.github.io/CNVMetrics/index.html
    associated to package.
  - Vignette section 'Workflow for metrics calculated using CNV status
    calls' is complete.

BUG FIXES

  - None

                        Changes in version 0.1.3                        

NEW FEATURES

  - None

SIGNIFICANT USER-VISIBLE CHANGES

  - plotOneOverlapMetric() method has a new argument silent=TRUE so that
    the plot is not drawn by default.

BUG FIXES

  - plotOneOverlapMetric() method now uses sample distance for
    clustering as default clustering method.

                        Changes in version 0.1.2                        

NEW FEATURES

  - plotOneOverlapMetric() method enables plotting result of overlapping
    metric calculation.

SIGNIFICANT USER-VISIBLE CHANGES

  - calculateOverlapRegionsMetric() method changed to
    calculateOverlapMetric().

BUG FIXES

  - None

                        Changes in version 0.1.1                        

NEW FEATURES

  - Added a NEWS.md file to track changes to the package.
  - calculateOverlapRegionsMetric() method enables calculation of
    similarity metrics using overlapping amplified/deleted regions.

SIGNIFICANT USER-VISIBLE CHANGES

  - None.

BUG FIXES

  - None