ccTutorial
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ccTutorial.
Data package for ChIP-chip tutorial
Bioconductor version: 3.18
This is a data package that accompanies a ChIP-chip tutorial, which has been published in PLoS Computational Biology. The data and source code in this package allow the reader to completely reproduce the steps in the tutorial.
Author: Joern Toedling, Wolfgang Huber
Maintainer: Joern Toedling <joern.toedling at curie.fr>
citation("ccTutorial")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ccTutorial")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ccTutorial")| A tutorial on how to analyze ChIP-chip readouts using Bioconductor | R Script | |
| Supplement to A tutorial on how to analyze ChIP-chip readouts using Bioconductor | R Script | |
| Reference Manual |
Details
| biocViews | ChipOnChipData, ExperimentData, MicroarrayData, Mus_musculus_Data |
| Version | 1.40.0 |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), Ringo(>= 1.9.8), affy(>= 1.23.4), topGO(>= 1.13.1) |
| Imports | Biobase |
| System Requirements | |
| URL |
See More
| Suggests | biomaRt, Biobase(>= 2.5.5), xtable |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ccTutorial_1.40.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/ccTutorial |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ccTutorial |
| Package Short Url | https://bioconductor.org/packages/ccTutorial/ |
| Package Downloads Report | Download Stats |