TxDb.Hsapiens.UCSC.hg19.knownGene

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see TxDb.Hsapiens.UCSC.hg19.knownGene.

Annotation package for TxDb object(s)

Bioconductor version: 3.18

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Author: Marc Carlson, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("TxDb.Hsapiens.UCSC.hg19.knownGene")):

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TxDb.Hsapiens.UCSC.hg19.knownGene")

For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual	PDF

biocViews	AnnotationData, Genetics, Homo_sapiens, TxDb
Version	3.2.2
License	Artistic-2.0
Depends	GenomicFeatures(>= 1.21.30)
Imports	AnnotationDbi
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me	annotation, FDb.InfiniumMethylation.hg19, Homo.sapiens, variants, vulcan
Imports Me	appreci8R, ChIPQC, ChIPseeker, decompTumor2Sig, epimutacions, HiLDA, musicatk, nearBynding, OutSplice, profileplyr, RareVariantVis, rCGH, RgnTX, rGREAT, signifinder, UMI4Cats, uncoverappLib
Suggests Me	AllelicImbalance, AnnotationDbi, annotatr, ATACseqQC, beadarray, BiocOncoTK, BiocParallel, biomvRCNS, biovizBase, borealis, bumphunter, chipenrich.data, ChIPpeakAnno, chromPlot, CNVRanger, cpvSNP, CRISPRseek, derfinder, derfinderPlot, dmrseq, EpiCompare, EpiMix, esATAC, FRASER, GA4GHclient, GA4GHshiny, gage, geneAttribution, GENESIS, GenomicAlignments, GenomicFeatures, GenomicInteractionNodes, GenomicRanges, GenVisR, ggbio, gmapR, GRaNIE, groHMM, GUIDEseq, gwascat, HelloRanges, HTSeqGenie, InPAS, karyoploteR, MAST, MesKit, MutationalPatterns, NanoMethViz, NoRCE, OUTRIDER, pageRank, plotgardener, ProteoDisco, PureCN, R3CPET, ramr, regionalpcs, regionReport, RiboProfiling, RLSeq, rtracklayer, SGSeq, SigFuge, SOMNiBUS, spatzie, SplicingGraphs, StructuralVariantAnnotation, SummarizedExperiment, svaNUMT, svaRetro, TCGAutils, TFEA.ChIP, trackViewer, transcriptR, tximport, VariantAnnotation, VariantFiltering, VariantTools
Links To Me

Follow Installation instructions to use this package in your R session.

Source Package	TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz
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macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/
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