Tian, Luyi, Su, Shian, Dong, Xueyi, Amann-Zalcenstein, Daniela, Biben, Christine, Seidi, Azadeh, Hilton, J D, Naik, H S, Ritchie, E M (2018). “scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data.” PLoS computational biology, 14(8), e1006361.
Amarasinghe SL, Yang P, Voogd O, Yang H, Du MRM, Su S, Brown DV, Jabbari JS, Bowden R, Ritchie ME (2023). “scPipe: An extended preprocessing pipeline for comprehensive single-cell ATAC-Seq data integration in R/Bioconductor.” bioRxiv. doi:10.1101/2023.09.25.559230, https://www.biorxiv.org/content/early/2023/09/25/2023.09.25.559230.