FunciSNP.data

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see FunciSNP.data.

Various data sets for use with the FunciSNP package


Bioconductor version: 3.12

Data sets needed for FunciSNP to integrate information from GWAS, 1000genomes and chromatin feature, in order to identify functional SNP in coding or non-coding regions.

Author: Simon G. Coetzee <simon at simoncoetzee.com> and Houtan Noushmehr, PhD <houtan at usp.br>

Maintainer: Simon G. Coetzee <scoetzee at gmail.com>

Citation (from within R, enter citation("FunciSNP.data")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FunciSNP.data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews ENCODE, ExperimentData, Project1000genomes, SNPData
Version 1.26.0
License GPL-3
Depends R (>= 2.14.0), IRanges
Imports rtracklayer
System Requirements
URL http://coetzeeseq.usc.edu/publication/Coetzee_SG_et_al_2012/
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/FunciSNP.data
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/FunciSNP.data
Package Short Url https://bioconductor.org/packages/FunciSNP.data/
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