ABAData

This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ABAData.

Averaged gene expression in human brain regions from Allen Brain Atlas


Bioconductor version: 3.12

Provides the data for the gene expression enrichment analysis conducted in the package 'ABAEnrichment'. The package includes three datasets which are derived from the Allen Brain Atlas: (1) Gene expression data from Human Brain (adults) averaged across donors, (2) Gene expression data from the Developing Human Brain pooled into five age categories and averaged across donors and (3) a developmental effect score based on the Developing Human Brain expression data. All datasets are restricted to protein coding genes.

Author: Steffi Grote

Maintainer: Steffi Grote <steffi_grote at eva.mpg.de>

Citation (from within R, enter citation("ABAData")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ABAData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ABAData")
ABAData: gene expression data to use with enrichment analysis package ABAEnrichment HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, ExpressionData, Homo_sapiens_Data, MicroarrayData, RNASeqData
Version 1.20.0
License GPL (>= 2)
Depends R (>= 3.2)
Imports
System Requirements
URL
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Suggests BiocStyle, knitr, ABAEnrichment
Linking To
Enhances
Depends On Me
Imports Me ABAEnrichment
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ABAData_1.20.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/ABAData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ABAData
Package Short Url https://bioconductor.org/packages/ABAData/
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