Changes in version 1.3.8                        

  - rename files of code. (2021-03-23, Tue)
  - add aliases for ggbartaxa and ggdiffbartaxa. (2021-03-23, Tue)

                        Changes in version 1.3.7                        

  - optimized import for installation. (2021-03-15, Mon)
  - add sampleLevels in ggbartax to adjust the order of axis label.
    (2021-03-12, Fri)
  - update import_qiime2 to avoid error when only feature table is
    provided. (2021-02-26, Fri)

                        Changes in version 1.3.6                        

  - convert svg dev to pdf dev. (2021-02-04, Thu)

                        Changes in version 1.3.5                        

  - fix an error for example of ggrarecurve. (2021-01-07, Thu)
    factorNames="Group" to factorNames="group"

                        Changes in version 1.3.4                        

  - fix a bug for numeric sample name. (2020-11-26, Thu)
  - geom_tiplab also support circular layout, so remove geom_tiplab2.
    (2020-11-26, Thu)

                        Changes in version 1.3.3                        

  - add as.treedata for taxonomyTable class. (2020-11-23, Mon)

                        Changes in version 1.3.2                        

  - ggrarecurve can be set color with variable of group for each
    samples. (2020-11-11, Tue)
      - using shadow=FALSE and providing factorNames
      - https://github.com/YuLab-SMU/MicrobiotaProcess/issues/21
  - add get_rarecurve to avoid repeated calculation when displaying rare
    curve. (2020-11-17, Tue)
      - rareres <- get_rarecurve(obj, chunks=400) p <-
        ggrarecurve(rareres)

                        Changes in version 1.3.1                        

  - ggordpoint add showsample to show the labels of sample. (2020-10-29,
    Thu)
  - the point of ggordpoint use the points of ggstar. (2020-10-30, Fri)
  - to obtain the dynamic arguments of diff_analysis, the call was
    changed to someparams. someparams contained the arguments used in
    other functions. (2020-11-09, Mon)
      - https://github.com/YuLab-SMU/MicrobiotaProcess/issues/20

                        Changes in version 1.2.0                        

  - Bioconductor 3.12 release (2020-10-28, Wed)

                       Changes in version 1.1.13                        

  - removed retrieve_seq and mapply_retrieve_seq function, since these
    need internet. Which might cause time out when check. (2020-10-16,
    Fri)

                       Changes in version 1.1.12                        

  - modified a bug in diff_analysis.phyloseq: change tax_table(ps) to
    ps@tax_table to avoid generate error when tax_table is NULL.
    (2020-10-15, Thu)

                       Changes in version 1.1.11                        

  - update the examples of drop_taxa. (2020-10-14, Wed)

                       Changes in version 1.1.10                        

  - update ggdiffclade to support data.frame input when reduce is TRUE.
    (2020-08-28, Fri)

                        Changes in version 1.1.9                        

  - update ggordpoint to fit the usage when user want to set mapping by
    manually. (2020-08-25, Tue)

                        Changes in version 1.1.8                        

  - get_taxadf, get_alltaxadf and diff_analysis has supported function
    datasets or other type datasets. (2020-08-17, Mon)

                        Changes in version 1.1.7                        

  - bugfix: cladetext argument has been omitted in ggdiffclade, now it
    has been fixed. (2020-08-14, Fri)
  - deprecated argument: the size argument controlled the width of line
    of tree has been deprecated. The linewd replace it (2020-08-14,
    Fri).

                        Changes in version 1.1.6                        

  - removeUnkown argument has been replaced with removeUnknown in
    ggdiffbox, ggeffectsize, ggdifftaxbar and ggdiffclade. (2020-08-12,
    Wed)
  - class argument has been replaced with classgroup in diff_analysis.
    (2020-08-12, Wed)
  - add inward_circular layout in ggdiffclade. (2020-08-12, Wed)

                        Changes in version 1.1.5                        

  - ggdifftaxbar supports png, tiff format. (2020-08-10, Mon)
  - add stop information to state the class argument in diff_analysis.
    (2020-08-10, Mon)

                        Changes in version 1.1.4                        

  - add tax_table information to result of get_taxadf. (2020-08-07, Fri)

                        Changes in version 1.1.3                        

  - change according to dplyr (v=1.0.0) (2020-08-05, Wed)
      - remove rename_ and group_by_
  - modified the angle to 90 in ggdiffclade when layout is slanted or
    rectangular (2020-08-05, Wed)

                        Changes in version 1.1.2                        

  - fix a bug. When the first rank taxa level (Kingdom) is NA.

                 Changes in version 0.99.1 (2020-03-03)                 

  - First release of Bioconductor

                 Changes in version 0.99.0 (2019-08-14)                 

  - Submitted to Bioconductor